Breakfast Egg Muffins

Featured in: Holiday Breakfasts

These protein-packed muffins combine fluffy eggs with savory bacon, sharp cheddar cheese, and vibrant diced bell peppers for a convenient breakfast option. Simply whisk eggs with milk, fold in your favorite mix-ins, and bake in a muffin tin until golden and set.

The beauty of these handheld breakfasts lies in their versatility—swap bacon for sausage, add spinach or mushrooms, or experiment with different cheeses. They freeze exceptionally well and reheat beautifully, making them ideal for meal prep.

Each muffin delivers 11 grams of protein while staying naturally gluten-free. Serve warm with salsa or hot sauce for an extra kick, or enjoy them on the go during hectic mornings.

Updated on Wed, 28 Jan 2026 15:42:00 GMT
Golden-brown Breakfast Egg Muffins filled with cheddar cheese, crumbled bacon, and diced bell peppers. Save It
Golden-brown Breakfast Egg Muffins filled with cheddar cheese, crumbled bacon, and diced bell peppers. | zetluna.com

The first time I made these breakfast egg muffins was during a particularly chaotic work week when I desperately needed portable morning meals. Standing in my kitchen at 6 AM, bleary-eyed with coffee in hand, I discovered the simple magic of turning basic ingredients into something that would solve my morning rush dilemma. The satisfying pop as each golden muffin released from the tin convinced me Id found my new breakfast solution. What started as pure practicality has since become one of my most requested recipes when friends stay overnight.

Last holiday season, my sister was visiting with her always-hungry teenagers who seemed to require feeding every two hours. I woke up early and quietly filled the kitchen with the aroma of these egg muffins baking, the scent of bacon and peppers gently wafting upstairs. When everyone stumbled down at different times throughout the morning, there was always something warm and satisfying waiting, no matter when hunger struck. My nephews now request these egg muffins specifically whenever they visit, and my sister has added them to her own breakfast rotation.

Ingredients

  • Eggs: I prefer using large eggs for their consistent size, and I always bring them to room temperature first by placing them in warm water for a few minutes to help them bake more evenly.
  • Bell peppers: The mix of colors doesnt just look pretty, each color has its own subtle flavor difference that adds complexity to these simple muffins.
  • Bacon: Pre-cooking the bacon until its just crisp but not burnt ensures it adds flavor without becoming too chewy or tough in the final product.
  • Cheddar cheese: Freshly grated cheese melts much better than the pre-shredded bags which contain anti-caking agents that can affect the texture.
  • Seasonings: The combination of garlic powder and paprika gives these a savory depth that plain salt and pepper alone cant achieve.

Instructions

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Prep your workspace:
Preheat your oven to 350°F and generously grease that muffin tin, making sure to coat the sides well. I learned this step cannot be rushed or skimped on unless you enjoy scrubbing egg cement from pan crevices.
Create your egg base:
Whisk those eggs and milk together until you see a bit of froth forming on top. That little bit of air helps create a lighter texture in the final product.
Mix in the goodies:
Fold in your cheese, vegetables, meat and seasonings with a gentle hand. You want everything evenly distributed without deflating all the air youve just whisked in.
Fill the cups:
Pour your mixture into the muffin cups about two-thirds full to allow room for rising. Watch for even distribution of the chunky bits so each muffin gets its fair share of the good stuff.
Bake to golden perfection:
Slide the tin into your preheated oven and set a timer for 18 minutes. Youll know theyre done when the centers are set but still look moist and the edges have just started to pull away from the sides.
Cool before removing:
Let them rest in the pan for those crucial 5 minutes. Rushing this step leads to broken muffins as Ive painfully discovered on multiple impatient mornings.
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Grill meats and vegetables indoors with beautiful sear marks and easy cleanup using minimal oil.
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Twelve savory Breakfast Egg Muffins cooling on a wire rack, perfect for meal-prepping a healthy breakfast. Save It
Twelve savory Breakfast Egg Muffins cooling on a wire rack, perfect for meal-prepping a healthy breakfast. | zetluna.com

One rainy Sunday afternoon, I made a double batch of these egg muffins with my young niece who was going through a picky eating phase. As we chopped vegetables together, she decided to arrange the diced peppers into tiny smiley faces on top of each muffin before baking. Not only did those colorful smiles survive the baking process, but they also somehow convinced her to try eggs for the first time in months. Now she calls them happy breakfast muffins, and making them has become our special cooking ritual whenever she visits.

Storage and Meal Prep

These muffins have revolutionized my weekly meal prep routine, saving me countless morning minutes and drive-through dollars. After cooling completely, I pack them in glass containers with parchment paper between layers to prevent sticking. For freezing, I wrap each muffin individually in plastic wrap before placing them in a freezer bag, which prevents them from forming ice crystals and developing that dreaded freezer taste. When properly stored this way, Ive enjoyed them up to two months later with barely any difference in texture or flavor.

Variations to Try

Over the years of making these egg muffins, Ive developed several favorite variations that keep the recipe from ever becoming boring. A Mediterranean version with feta, spinach and olives transports me to vacation with every bite. For something heartier, I sometimes add diced potato thats been par-boiled for five minutes first. During garden season, fresh herbs make all the difference, with chives and dill being particular standouts against the rich egg backdrop.

Serving Suggestions

While these muffins are perfectly delicious on their own, Ive discovered some accompaniments that elevate them to brunch-worthy status. A simple arugula salad with lemon vinaigrette provides a bright contrast to the richness of the eggs. Fresh fruit on the side adds a sweet balance to the savory flavors. For special occasions, a dollop of pesto or quick avocado mash on top takes these humble muffins to an entirely new level.

  • Try serving with a small cup of soup for a complete light lunch that feels more substantial than the sum of its parts.
  • Pack in lunchboxes with a frozen juice box that will keep them cool until mealtime and thaw perfectly by then.
  • When serving for brunch gatherings, present on a tiered stand with other finger foods for an impressive yet low-effort spread.
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Boil water quickly for tea, coffee, instant soups, and faster prep when cooking grains or noodles.
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A freshly-baked Breakfast Egg Muffin split in half, revealing fluffy eggs, melted cheddar, and crispy bacon. Save It
A freshly-baked Breakfast Egg Muffin split in half, revealing fluffy eggs, melted cheddar, and crispy bacon. | zetluna.com

Whether youre rushing out the door on busy weekday mornings or leisurely enjoying weekend brunch, these versatile egg muffins adapt to your needs with minimal fuss and maximum flavor. Keep the basic formula in mind and youll always be just 30 minutes away from a protein-packed meal that truly satisfies.

Common Questions About Recipes

Can I make these ahead of time?

Yes, these muffins are excellent for meal prep. Bake them on Sunday, store in an airtight container in the refrigerator for up to 5 days, and reheat individual portions in the microwave for 30–45 seconds when ready to eat.

How do I prevent the muffins from sticking to the tin?

Generously grease your muffin tin with cooking spray or olive oil before pouring in the egg mixture. After baking, let them cool for 5 minutes, then run a thin knife around the edges to loosen before removing.

Can I freeze these muffins?

Absolutely. Once completely cooled, place muffins in a freezer-safe bag or container. They'll keep for up to 3 months. Thaw overnight in the refrigerator and reheat in the microwave before serving.

What vegetables work best in these muffins?

Bell peppers, onions, spinach, mushrooms, and diced tomatoes all work wonderfully. Sauté vegetables slightly before adding to the egg mixture to prevent excess moisture from making the muffins soggy.

How do I know when the muffins are done baking?

The muffins are ready when they're set and lightly golden on top, about 18–20 minutes at 350°F. Insert a toothpick into the center—if it comes out clean, they're done. The centers should not be jiggly.

Can I make these vegetarian?

Simply omit the bacon and add extra vegetables like spinach, mushrooms, or diced tomatoes. You could also incorporate plant-based protein alternatives or increase the cheese for added richness.

Breakfast Egg Muffins

Golden muffins with eggs, bacon, cheddar, and bell peppers for easy breakfast prep

Prep Time
10 mins
Time to Cook
20 mins
Overall Time
30 mins
Authored by Clara

Recipe Type Holiday Breakfasts

Skill Level Required Easy

Cuisine Type American

Recipe Output 5 Number of Portions

Dietary Needs Free of Gluten, Low-Carbohydrate

The Ingredients You'll Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers, mixed colors
02 1/2 cup diced yellow onion

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon kosher salt
02 1/4 teaspoon freshly ground black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon smoked paprika

For Greasing

01 Cooking spray or extra virgin olive oil for muffin tin

Step-by-Step Instructions

Step 01

Preheat oven: Set oven temperature to 350°F and allow 5 minutes for preheating.

Step 02

Prepare muffin tin: Lightly coat a standard 12-cup muffin tin with cooking spray or olive oil, ensuring all surfaces are adequately covered to prevent sticking.

Step 03

Combine egg base: In a large mixing bowl, vigorously whisk together eggs and milk until well combined and slightly frothy, approximately 1-2 minutes.

Step 04

Incorporate remaining ingredients: Add cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika to the egg mixture. Stir until all components are evenly distributed throughout.

Step 05

Fill muffin cups: Carefully pour the egg mixture into prepared muffin tin, filling each cup approximately two-thirds full to allow for slight expansion during baking.

Step 06

Bake muffins: Place in preheated oven and bake for 18-20 minutes until set and lightly golden. Muffins are done when a toothpick inserted in the center comes out clean.

Step 07

Cool and remove: Remove from oven and allow to cool for 5 minutes. Run a thin knife around edges if necessary and carefully transfer muffins from tin to serving plate.

Step 08

Store or serve: Serve muffins warm or at room temperature. For storage, cool completely and place in airtight container. Refrigerate for up to 5 days or freeze for extended storage. Reheat in microwave before serving.

Tools You'll Need

  • Standard 12-cup muffin tin
  • Large mixing bowl
  • Wire whisk
  • Measuring cups and measuring spoons
  • Chef's knife and cutting board

Allergy Information

Review each ingredient to identify allergens and consult an expert if needed.
  • Contains eggs
  • Contains milk and dairy products
  • May contain pork depending on protein selection
  • Verify gluten-free status on all processed ingredients including sausage and seasonings

Nutritional Facts (Per Serving)

Keep in mind these details are for general guidance and shouldn't replace professional advice.
  • Caloric Content: 150
  • Fats: 10 grams
  • Carbohydrates: 2 grams
  • Proteins: 11 grams