Sourdough Onion Bagels

Featured in: Holiday Breakfasts

These bagels combine a tangy sourdough starter with bread and whole wheat flours to create a chewy, flavorful base. After a long fermentation, the dough is shaped, boiled briefly in a malted syrup bath, then topped with golden, sautéed onions before baking to a perfect crust. The result is a rich, textured bagel with subtle sweetness from the onions and deep flavors developed through fermentation. Ideal for a hearty breakfast or sandwich base.

Updated on Sat, 14 Feb 2026 14:08:00 GMT
Chewy sourdough bagels topped with golden sautéed onions, baked to a crisp crust and perfect for breakfast or sandwiches. Save It
Chewy sourdough bagels topped with golden sautéed onions, baked to a crisp crust and perfect for breakfast or sandwiches. | zetluna.com

There's something about the moment when sourdough starter bubbles up and you know it's ready—that's when I decided to stop buying bagels from the shop and make them myself. My kitchen filled with that unmistakable tangy smell, and I realized bagels weren't some impossible baker's secret, just patience and good technique. The first batch came out chewy with a crackling crust, and I immediately topped them with caramelized onions that turned almost jammy in the pan. My partner couldn't stop eating them, which felt like real victory. Now these sourdough onion bagels are what I reach for on Saturday mornings.

I made these for a small brunch last spring, and watching people bite into a warm bagel still steaming from the cooling rack—then their surprised faces when they tasted the sourdough depth—that's when I knew this recipe had to be perfected. Someone asked if I'd trained as a baker, and I laughed because three months earlier I'd burned my first batch. The bagels became the thing everyone asked me to bring, which meant I finally had an excuse to make them every weekend.

Ingredients

  • Active sourdough starter (100 g, 100% hydration): This is your flavor engine—the slow fermentation creates that distinctive tangy note that makes homemade bagels sing.
  • Bread flour (400 g): Don't skip this for all-purpose; the higher protein content gives you real chew and a better rise.
  • Whole wheat flour (50 g): Just enough to add subtle nutty complexity without overwhelming the sourdough.
  • Sea salt (10 g): Use fine salt so it distributes evenly through the dough.
  • Granulated sugar (25 g): A modest amount that feeds the fermentation and balances the tanginess.
  • Lukewarm water (240 ml): Temperature matters—too hot kills the starter, too cold slows everything down.
  • Large yellow onion (1, finely chopped): Yellow onions caramelize beautifully and turn almost sweet; red onions stay too sharp.
  • Olive oil or unsalted butter (1 tbsp): Butter gives richer flavor, but olive oil works if that's what you have.
  • Barley malt syrup (1 tbsp): This is the secret ingredient that gives bagels their classic glossy finish and subtle sweetness in the boiling water.
  • Baking soda (1 tsp): Raises the pH of the boiling water, creating that signature bagel crust and chew.

Instructions

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Coax out the onion sweetness:
Heat your oil in a skillet over medium heat, then add the chopped onions with salt. Let them cook low and slow for 8–10 minutes, stirring occasionally—you're not trying to rush this, just coax out all that natural sweetness until they're soft and golden. The kitchen will smell incredible.
Bring the dough together:
In a large bowl, combine your active starter, both flours, salt, sugar, and water. Mix until everything comes together into a shaggy mass; it'll look rough at first, and that's exactly right.
Build strength through kneading:
Knead for 8–10 minutes until the dough becomes smooth and elastic—this is when you're developing the gluten that gives bagels their chew. Cover the bowl and let it rest for 4 hours at room temperature.
Develop flavor with stretch-and-folds:
During that 4-hour rest, perform two stretch-and-folds about 30 minutes apart in the first 2 hours. Wet your hand slightly, grab one side of the dough, fold it over itself, rotate the bowl, and repeat—this builds structure without aggressive kneading.
Cold ferment for depth:
After the 4-hour rest, cover the dough and refrigerate overnight for 8–12 hours. This slow cold fermentation is where the sourdough magic happens, developing flavor that would take much longer at room temperature.
Shape with intention:
Divide the cold dough into 8 equal pieces. Roll each into a ball, then poke a hole in the center and gently stretch it until you have a bagel shape with about a 2-inch diameter hole.
Let them rise gently:
Place your shaped bagels on a parchment-lined baking sheet, cover loosely, and let them sit at room temperature for 1–2 hours. They should look slightly puffy but not massively risen—bagels don't need as much proof as bread.
Prepare the boiling bath:
Preheat your oven to 220°C (425°F), then bring 2 liters of water, barley malt syrup, and baking soda to a boil. The barley malt gives authentic flavor, but honey works if that's what you have.
Boil for the signature crust:
Working 1–2 bagels at a time, carefully place them into the boiling water. Boil for exactly 1 minute per side—this is what creates that chewy interior and sets the exterior so it won't rise too much in the oven.
Top while damp:
As each bagel comes out of the water, return it to the parchment sheet while still damp, then press the cooled sautéed onions onto the top. The moisture helps the onions stick beautifully.
Bake until golden:
Bake for 20–25 minutes until the bagels are deep golden brown and cooked through. The onions on top will darken slightly—that's the caramelization deepening, which is exactly what you want.
Cool before slicing:
Transfer the bagels to a wire rack and let them cool completely before slicing. They'll continue to set as they cool, and you'll get a better, less gummy slice if you can wait.
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| zetluna.com

There was a morning when I sliced one open still warm and the steam rose up carrying that deep, slightly tangy aroma—and I thought about how something so simple (just flour, water, time, onions) could taste so good. That's when I understood why people get obsessed with bread baking.

Why Sourdough Starter Makes All the Difference

A lot of people think bagels need commercial yeast to work, but sourdough starter does something different—it ferments slowly over many hours, building complexity that instant yeast can't match. The tanginess develops gradually, giving you that New York deli flavor without any shortcuts. If you don't have a sourdough starter yet, it's worth creating one or asking a baker friend for some; once you have it, you can make these bagels forever.

The Caramelized Onion Topping Is Worth the Wait

Don't rush the onions—I learned this the hard way by cooking them on high heat, thinking I could speed things up. They turned bitter and thin instead of sweet and jammy. Low and slow means you're breaking down the onion's natural sugars, creating something almost confiture-like that clings to the bagel. The contrast between the tangy sourdough and the sweet, mellow onions is what makes these bagels memorable.

Making Them Your Own

The base recipe is solid, but these bagels respond beautifully to adjustments once you've made them once. Sesame seeds or poppy seeds pressed into the onions add texture and a subtle nutty note. Some mornings I've added a pinch of fresh cracked pepper to the onions, or scattered crispy fried shallots on top for crunch. You're building on something traditional, which means there's room to play.

  • Try everything toasted with cream cheese and smoked salmon—it becomes breakfast or brunch depending on what you're calling it.
  • These freeze beautifully for up to a month, and thawing at room temperature or toasting brings them right back to life.
  • If your bagels spread too wide during proofing, your dough might be too warm; the refrigeration time helps prevent this, so don't skip it.
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Golden-brown sourdough onion bagels with a tangy flavor and generous onion topping, ideal for a hearty breakfast or snack. Save It
Golden-brown sourdough onion bagels with a tangy flavor and generous onion topping, ideal for a hearty breakfast or snack. | zetluna.com

These bagels have become my weekend ritual, the thing I make when I want to slow down and feel like I'm creating something real. Once you've made them, store-bought bagels will never taste the same.

Common Questions About Recipes

What makes the sourdough base special?

The sourdough starter ferments the dough slowly, enhancing flavor depth and texture, resulting in a chewy crumb and tangy profile.

Why are the bagels boiled before baking?

Boiling helps set the crust and creates the characteristic shiny, chewy exterior by gelatinizing the starches on the surface.

How are the onions prepared for topping?

Onions are finely chopped and gently sautéed in olive oil or butter with a pinch of salt until soft and golden, enhancing their natural sweetness.

Can I use honey instead of malt syrup for boiling?

Yes, honey is a suitable alternative that adds a subtle sweetness and helps develop a rich color during boiling.

What is the purpose of the stretch-and-fold technique during fermentation?

It strengthens the dough’s gluten network, improves structure, and encourages better gas retention for an airy yet chewy crumb.

Are these bagels suitable for vegetarians?

Yes, all ingredients used are vegetarian-friendly, including the sourdough starter and toppings.

Sourdough Onion Bagels

Tangy sourdough bagels topped with sweet, golden sautéed onions, perfect for breakfast or sandwiches.

Prep Time
25 mins
Time to Cook
25 mins
Overall Time
50 mins
Authored by Clara

Recipe Type Holiday Breakfasts

Skill Level Required Medium

Cuisine Type American

Recipe Output 8 Number of Portions

Dietary Needs Veggie-Friendly

The Ingredients You'll Need

Sourdough Starter

01 3.5 oz active sourdough starter (100% hydration)

Dough

01 14.1 oz bread flour
02 1.8 oz whole wheat flour
03 0.35 oz sea salt
04 0.9 oz granulated sugar
05 8.1 fl oz lukewarm water

Onion Topping

01 1 large yellow onion, finely chopped
02 1 tablespoon olive oil or unsalted butter
03 0.25 teaspoon sea salt

Boiling

01 67.6 fl oz water
02 1 tablespoon barley malt syrup or honey
03 1 teaspoon baking soda

Step-by-Step Instructions

Step 01

Sauté Onions: Heat olive oil or butter in a skillet over medium heat. Add chopped onions and salt, sautéing for 8-10 minutes until soft and golden. Transfer to a plate to cool.

Step 02

Combine Dough Ingredients: In a large bowl, combine sourdough starter, bread flour, whole wheat flour, salt, sugar, and lukewarm water, mixing until a shaggy dough forms.

Step 03

Knead and Rest: Knead dough for 8-10 minutes until smooth and elastic. Cover and allow to rest for 4 hours at room temperature, performing two stretch-and-fold operations during the first 2 hours at 30-minute intervals.

Step 04

Bulk Fermentation: Cover dough and refrigerate overnight for 8-12 hours to develop flavor and structure.

Step 05

Shape Bagels: Divide dough into 8 equal portions. Roll each into a ball, create a hole in the center, and stretch gently to form a bagel with approximately 2-inch diameter hole.

Step 06

Proof Shaped Bagels: Place shaped bagels on parchment-lined baking sheet, cover, and allow to rise for 1-2 hours at room temperature until slightly puffy.

Step 07

Boil Bagels: Preheat oven to 425°F. Bring water, barley malt syrup, and baking soda to a rolling boil in a large pot. Boil bagels 1-2 at a time for 1 minute per side. Remove with slotted spoon and return to baking sheet.

Step 08

Top and Bake: While bagels are still damp, press sautéed onions firmly onto the tops. Bake for 20-25 minutes until golden brown and cooked through.

Step 09

Cool: Transfer bagels to a wire rack and cool completely before slicing.

Tools You'll Need

  • Large mixing bowl
  • Skillet
  • Slotted spoon
  • Baking sheet
  • Parchment paper
  • Wire cooling rack

Allergy Information

Review each ingredient to identify allergens and consult an expert if needed.
  • Contains gluten from wheat flour
  • May contain sesame traces if used as optional topping
  • Contains onions

Nutritional Facts (Per Serving)

Keep in mind these details are for general guidance and shouldn't replace professional advice.
  • Caloric Content: 250
  • Fats: 3 grams
  • Carbohydrates: 50 grams
  • Proteins: 7 grams